Science 2 January 2015:
Vol. 347 no. 6217 pp. 10-10
DOI:10.1126/science.347.6217.10
In Depth

Inching toward the 3D genome

Elizabeth Pennisi | 1 Comments

Maps of DNA's loops and folds advance—but may disagree.

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Re: "...the nucleome structure changes as cells age, differentiate, and divide, and researchers want to understand how and why."

Cell type differentiation is nutrient-dependent. RNA-directed DNA methylation links RNA-mediated amino acid substitutions to cell type differentiation via protein folding during life history transitions. Amino acid substitutions stabilize protein folding; mutations perturb it, during nutrient-dependent theromodynamic cycles of protein biosynthesis and degradation.

Life is physics and chemistry and communication -- http://dx.doi.org/10.1111/nyas.12570

The metabolism of nutrients links metabolic networks to genetic networks via species-specific pheromones that control the physiology of reproduction. Simply put, pheromones link nutrient-dependent life via physics, chemistry, and the conserved molecular mechanisms of communication in species from microbes to man.

Until nutrient-dependent protein folding is linked via the conserved molecular mechanisms of amino acid substitutions and pheromone-controlled DNA stability in organized genomes, which links the epigenetic landscape to the physical landscape of DNA, researchers must take a piece-meal approach to integrating the requirements for life and successful life history transitions -- despite the fact that life history transitions have been detailed in the context of the honeybee model organism. See: Honey bees as a model for understanding mechanisms of life history transitions http://www.ncbi.nlm.nih.gov/pubmed/15925525

Submitted on Fri, 01/02/2015 - 23:38